Biology Worthy of Life
An experiment in revivifying biology
This essay was published in The New Atlantis (Fall, 2011). Original publication: NetFuture #183 (November 10, 2011). Date of last revision: July 9, 2012. Copyright 2011, 2012 The Nature Institute. All rights reserved.
By clicking on the shaded rectangles at the end of many scientific terms, you can immediately read a definition of the terms in a separate glossary window (or tab, if your browser is set that way).
Most biologists, I suspect, will happily own up to the fact that they think of the organism as engaged in strikingly directed and meaningful activity. The lion stalking the gazelle, the bird building a nest, the larva spinning a cocoon, the rose flowering, the cell dividing and differentiating, the organism maintaining its own way of being amid the perturbations of its environment — they all reflect a kind of intentional pursuit we would never attribute to dust, rocks, ocean waves, or clouds.
Biologists, that is, will acknowledge that, at molecular and higher levels, they see almost nothing but an effective employment of a thousand interwoven means to achieve a thousand interwoven ends — all in an almost incomprehensibly organized, coordinated, and integrated fashion expressing the striving of the organism as a whole. The organism, they will say, as it develops from embryo to adult — as it socializes, eats, plays, fights, heals its wounds, communicates, and reproduces — is the most concertedly purposeful entity we could possibly imagine. It does not merely exist in accord with the laws of physics and chemistry; rather, it is telling the meaningful story of its own life.
And then they will take it all back.
In other words, the routine language of biological description is fully accepted, only to be effectively disowned. The explanation for this remarkable intellectual flexibility lies in a widespread view that runs as follows. Evolution produces organisms that we cannot help describing as purposeful and meaningful agents. That’s because natural selection tends to select organisms that are fit — well-adapted to their environments and “designed” for surviving. When organisms have features that are adapted for something, we naturally see these features as meaningful and purposeful. And an organism compounded of such features seems to be an agent with a goal of some sort; if nothing else, it seems to act intentionally in order to survive and reproduce.
This agency, however, is said to be more a matter of appearance than of fundamental reality. While meaning and purpose may (somehow) “emerge” during the course of evolution, they emerge from processes that, at the most basic level of explanation and understanding, know nothing of them. Certainly — as the rather strange conviction runs — meaning and purpose play no role in the evolutionary “mechanisms” that have so expertly given rise to them.
Perhaps the brashest and most publicly effective advertisements for this entrenched view have been argued by Richard Dawkins and Daniel Dennett. Dawkins is a biologist and award-winning popularizer of conventional evolutionary thought, having produced such bestsellers as The Selfish Gene and The Blind Watchmaker. Dennett, philosopher and deconstructor of consciousness, wrote about evolution in his widely influential book, Darwin’s Dangerous Idea: Evolution and the Meanings of Life. The two authors immensely admire each other’s work.
Dennett, in one of his characteristic remarks, assures us that “Through the microscope of molecular biology, we get to witness the birth of agency, in the first macromolecules that have enough complexity to ‘do things.’ . . . There is something alien and vaguely repellent about the quasi-agency we discover at this level — all that purposive hustle and bustle, and yet there’s nobody home”. Then, after describing a marvelous bit of highly organized and seemingly meaningful biological activity, he concludes:
Love it or hate it, phenomena like this exhibit the heart of the power of the Darwinian idea. An impersonal, unreflective, robotic, mindless little scrap of molecular machinery is the ultimate basis of all the agency, and hence meaning, and hence consciousness, in the universe (Dennett 1995a, pp. 202-3).
Or, we can listen to Dawkins: “Wherever in nature there is a sufficiently powerful illusion of good design for some purpose, natural selection is the only known mechanism that can account for it” (Dawkins 1996, p. 223). And: “Natural selection, the blind, unconscious, automatic process which Darwin discovered, and which we now know is the explanation for the existence and apparently purposeful form of life, has no purpose in mind. It has no mind and no mind’s eye. It does not plan for the future. It has no vision, no foresight, no sight at all” (Dawkins 2006, p. 9).
The general idea, then, looks something like this:
Of course, questions come to mind. Is the universe so schizoid or compartmentalized that any truth we observe at the “bottom” (whatever that means) must be proclaimed real, while the truth at other levels is unreal and illusory? This would be a particularly odd position to take in biology, where characteristic explanation runs from higher-level context to lower-level part (as we saw in “The Unbearable Wholeness of Beings” and “From Physical Causes to Organisms of Meaning”). And if we really did find the root essence of things only at the bottom, then where would we locate Dennett’s presumed scraps of mindless machinery amid the extraordinarily non-machinelike (and indeed scarcely material) quantum weirdness that has so preoccupied physicists for the past century? Physicists are the last people in the world with reason to claim mechanistic behavior at the bottom — and, in fact, some among them have long been driven by their own subject matter to reflect upon the mindful universe (Henry 2005).
As for the organism: are its apparently meaningful strivings meaningful or not? If they are not — if, for example, the appearance of purpose is an “illusion”, as Dawkins puts it — then what is the difference between merely illusory purpose and the real thing? Perhaps he will say there is only illusion. But then, if there is nothing for the illusion to be a convincing illusion of, it hardly makes sense to say it is an illusion at all, as opposed to being just what it seems to be. On the other hand, if Dawkins admits that meaning and purpose actually exist as realities and are therefore available to be mimicked in an illusory way, what grounds does he have for claiming meaninglessness and purposelessness as fundamental to the world’s character?
But while questions such as these do point to an extraordinary slipperiness in the remarks by Dawkins and Dennett, I do not intend to pursue the endless argument to which they would doubtless lead. There is a more fruitful way to assess the claims of mindless mechanism and illusion, and that is simply by comparing them to living creatures, especially at the molecular level that so impresses these writers as being both fundamental and rooted in meaninglessness.
Dennett’s contention that through the microscope we “witness the birth of agency, in the first macromolecules that have enough complexity to ‘do things’” is itself an illusion. Neither he nor anyone else has ever witnessed the birth of such agency through a microscope or any other instrument — a fact that many decades of unrestrained speculation about the creation of life some billions of years ago does nothing to change. What we see through the microscope is what we see with our unaided eyes: life comes from life. Living cells, with all their displays of agency, come from other living cells. Open any journal of any sub-sub-subdiscipline of biology, and you will immediately be overwhelmed by suggestions of agency even at the lowest levels. Molecules, we are told to a fault, are bent on regulating, signaling, stimulating, responding, controlling, assisting, suppressing, healing, repairing, sensing, coordinating — and all in a way that can be understood only contextually. There is nothing at any level of observation, whether above or below macromolecules, that is not caught up in the meaningful life of the organism as a whole.
Living agency is, if anything, even more vivid when we shift our attention to evolution and consider what passes from one generation to the next — for example, through “simple” cell division and mitosis (processes of almost unfathomable complexity) or through the even more elaborately orchestrated fugue we know as meiosis in sexual reproduction. In the latter case, everything comes to an intense focus in the sublime performance that one pair of authors describes as “Chromosome Choreography: The Meiotic Ballet” (Page and Hawley 2003). Nowhere does the cell seem more intent on moving toward a definite end than in the intricately coordinated steps of this ballet. And so a path is prepared from one generation to the next. Life engenders life.
This unbroken thread of life explains why we encounter the language of meaning and purpose that the biologist breathes into every description of every organism. Everything characteristic of the organism, from its behavior as a whole down through the performance of its various organs all the way to the micro-world of interwoven molecular processes in the cell — that is, everything distinctively biological as opposed to merely physical and chemical — can only be described, and always is described, in a language of governing norms, coordinated processes, and means brought into the service of ends. We’re never talking merely about physical and chemical interactions, but rather about processes continually shifting, transforming, and adjusting themselves in relation to their context in order to go somewhere, if only to hold themselves within reasonable distance of some particular state (as when warm-blooded creatures maintain their internal temperature within a certain range). And this kind of going or maintaining ceases upon death, when everything takes on an entirely different, nonliving character.
Such, then, is the living reality that Dawkins refers to as the “appearance of design” or the “illusion of design and planning” (2006a, p. 29). It’s also what Dennett has in mind when he writes, “All the Design in the universe can be explained as the product of a process that is ultimately bereft of intelligence, in other words an algorithmic process that weds randomness and selection to produce . . . all the intelligence that exists” (Dennett 1995b)1.
It’s a bizarre stance. Bizarre, above all, because everything in the drama of evolution presupposes the meaning-soaked activity of the organisms whose meaning is said to be explained away. The organism reproduces itself by bringing all its choreographic powers of organization, coordination, and integration to bear upon the reproductive process; only so do we have a passage from one generation to another. And only so does natural selection (which itself involves nothing other than a living, intensely directed engagement of organisms with each other in an environment partly of their own making) gain material to work on.
Where, then, do we find dumb, lifeless mechanisms blindly engendering new life forms? Where do we see anything other than the elaborate, interwoven, overwhelmingly meaningful activity of living beings, playing out at every level, from the molecular to the ecological?
One answer will occur immediately to anyone properly educated in conventional evolutionary theory: random mutation — the arbitrary change of an organism’s genomic sequence — is what most obviously happens blindly. It’s the sort of change that used to be routinely evoked by mentioning the mutagenic effects of cosmic rays — the impacts of “blind chance” that are supposed to provide the raw material for natural selection to act upon2.
Of course, every creature spends a lifetime encountering unpredictable impacts from its environment. No one would say in general that such encounters, even if they were truly “random” in some sense, overcome the coherent, insistent, and distinctive life of the organism; rather, they are occasions for expressing that life. Engagement with the never fully predictable larger environment is what life is about, and it always happens in a way that is influenced, not only by the environment, but also by the preferred way of being of the organism. A great deal hinges upon how the organism takes up the things it encounters. Randomness in environmental encounters (if the idea makes any sense at all) does not imply randomness in the organism. This applies as much to cosmic ray encounters as to buffetings by the wind or attacks by predators.
All we can possibly mean by “random occurrences” relative to an organism is “occurrences that have not yet been woven into the meaningful life story of the organism”. And even before any such weaving takes place, the idea that an event is “random” only perplexes our understanding. We are immersed in — we participate moment by moment in — a world that is ordered and full of meaning, and it is hard to see how we can detach ourselves so fully from our context as to encounter something wholly “out of context”.
As for genetic mutations specifically, the crucial point was already made by Oxford University biophysicist Norman Cook in 1977: “Biological intervention through enzymes and enzyme systems is the principal mechanism of in vivo mutation”. Biologists commonly interpret such mutations as random errors in vital processes such as DNA replication, but “if . . . changes in the genetic material are indeed mediated by other cellular molecules, then the idea of ‘randomness’ lacks all but the most trivial descriptive meaning, referring only to our knowledge of the mutation event” (Cook 1977). Furthermore, as British radiologist B. A. Bridges pointed out: even studies of radiation-induced mutation in bacteria have shown that cellular repair systems are “necessary for nearly all of the mutagenic effect of ultra-violet and around 90 percent of that of ionizing radiation” (Bridges 1969).
That is, outcomes depend at least in part on what the organism does with the influences impinging upon it. You might think that radiation mostly causes very local alterations in DNA, corresponding to the immediate location of damage. Yet the great majority of radiation-induced mutations involve large regions of DNA, often encompassing more than an entire gene spanning thousands of nucleotide base pairs, or letters, of the genetic sequence (Elespuru and Sankaranarayanan 2006). The organism making such changes is apparently prepared to respond as best it can and in its own way when it engages these potentially harmful elements of its environment.
Despite the fact that early work on ionizing radiation “provided the genetic basis for” modern evolutionary theory and quickly became “a theoretical cure-all for the difficult problem of genetic diversity” (Cook’s phrases), this particular cause of mutation hardly figures centrally in the broad literature on genetic change today. There are simply too many other relevant processes going on — and none of them looks like the cosmic ray activity whose misconstrual as a kind of archetype of randomness was so vital to the formulation of evolutionary theory as we have it today.
In fact, we are no longer free to imagine that evolution waits around for “accidents” to knock genes askew so as to provide new material for natural selection to work on. The genome of every organism is actively and insistently remodeled as an expression of its context. Genetic sequences get rewritten, reshuffled, duplicated, turned backward, “invented” from scratch, and otherwise revised in a way that prominently advertises the organism’s accomplished skill in matters of genomic change. The illustrations of this skill are so extensive in the contemporary literature that there is no way to review them adequately here. For some examples, see the sidebar article, “Natural Genome Remodeling”.
And regardless of the source of mutation, or genetic change, one cannot ignore the explosively growing literature on how genes actually function within gene regulation networks. A mutation is subject not only to elaborate processes that repair, modify, or ignore the mutation, but also to regulatory networks that respond to the mutated gene according to the logic of the larger need. You will recall from a previous article how an organic context can retain a certain stable character in the face of relatively wide-ranging variations or disturbances in its lower-level constituent processes. Molecular biologists have discovered in studies with a number of organisms, including mice, that “knocking out” (disabling or mutating) both copies of a gene with important functions can in many circumstances leave the organism seemingly unimpaired and functioning normally (Barbaric et al. 2007).
But even leaving aside all the contextually coherent revision and all the meaning-making that bends the apparently random to the organism’s own purposes, we find that strictly low-level analyses show mutations to be nonrandom. The point isn’t disputed by anyone, and current researches aimed at elucidating all the factors conducive to genomic change are steadily expanding our field of view, with huge implications for evolutionary theory. This leaves but one last refuge for those who would persuade us that the mutational element of evolutionary change is blind, lifeless, and meaningless. Their argument runs this way:
Mutations are commonly said to occur “randomly”. However . . . mutations do not occur at random with respect to genomic location and gender, nor do all types of mutations occur with equal frequency. So, what aspect of mutation is random? Mutations are claimed to be random in respect to their effect on the fitness of the organism carrying them. That is, any given mutation is expected to occur with the same frequency under conditions in which this mutation confers an advantage on the organism carrying it, as under conditions in which this mutation confers no advantage or is deleterious. (Graur 2008)
Or as Douglas Futuyma, distinguished professor of ecology and evolution at the State University of New York at Stony Brook, once put it: “Mutation is random in [the sense] that the chance that a specific mutation will occur is not affected by how useful that mutation would be” (quoted in Beatty 1984).
So not even mutations, it turns out, are really random. There is only one crucial respect in which we need to declare them random if we would reduce to an illusion the meaningful coherence of all the rest of life: they are (in the special sense just given) random with respect to their effects upon fitness, and therefore in their evolutionary role. So runs the prevailing belief.
Is there any excuse for the huge burden of meaninglessness attached to the slender thread of presumed chance epitomized in cosmic rays — or is this sense of meaninglessness merely an illusory spell woven by evolutionary biologists? More particularly, does the concept of randomness gain clarity when we set it, as we are advised to do, beside that of fitness? We will see.
Fitness is usually taken to comprise all those traits affecting the organism’s ability to survive and produce viable offspring in its particular environment. But immediately we run into difficulties. Journalist Tom Bethell once illustrated a small part of the problem this way:
A mutation that enables a wolf to run faster than the pack only enables the wolf to survive better if it does, in fact, survive better. But such a mutation could also result in the wolf outrunning the pack a couple of times and getting first crack at the food, then abruptly dropping dead of a heart attack because the extra power in its legs placed an extra strain on its heart. (Bethell 1976)
Or perhaps, by outrunning its pack, the wolf would be more subject to the dangers of hoof or horn from a threatened animal — an animal that for a moment needn’t worry about more than one wolf. But this is hardly to begin a recital of the difficulties in assessing the fitness of any particular change. In a now-classic article, Harvard geneticist and evolutionary theorist Richard Lewontin once illustrated the near-impossibility of making judgments about fitness:
A zebra having longer leg bones that enable it to run faster than other zebras will leave more offspring only if escape from predators is really the problem to be solved, if a slightly greater speed will really decrease the chance of being taken and if longer leg bones do not interfere with some other limiting physiological process. Lions may prey chiefly on old or injured zebras likely in any case to die soon, and it is not even clear that it is speed that limits the ability of lions to catch zebras. Greater speed may cost the zebra something in feeding efficiency, and if food rather than predation is limiting, a net selective disadvantage might result from solving the wrong problem. Finally, a longer bone might break more easily, or require greater developmental resources and metabolic energy to produce and maintain, or change the efficiency of the contraction of the attached muscles (Lewontin 1978).
Lewontin was not the only central figure in evolutionary biology who long ago recognized the difficulty of assessing the fitness, or adaptive value, of traits. In 1953, the paleontologist George Gaylord Simpson opined that “The fallibility of personal judgment as to the adaptive value of particular characters, most especially when these occur in animals quite unlike any now living, is notorious”. And in 1975 the geneticist Theodosius Dobzhansky wrote that no biologist “can judge reliably which ‘characters’ are useful, neutral, or harmful in a given species” (both passages quoted in Brady 1982).
One evident reason for this pessimism is that we cannot isolate traits — or the mutations producing them — as if they were independent causal elements. Organism-environment relations present us with so much complexity, so many possible parameters to track, that, apart from obviously disabling cases, there is no way to pronounce on the significance of a mutation for an organism, let alone for a population or for the future of the species. To pose just one question within the sea of unknowns: even if a mutation could in one way or another be deemed harmful to the organism in its current environment, what if the organism used this element of disharmony as a spur either to re-shape its environment or to alter its own behavior, thereby creating a distinctive and advantageous niche for itself and others of its kind?
To see the frailty of the fitness concept most clearly, you need only look at actual attempts to explain why a given trait renders an animal more (or less) fit in its environment. For example, many biologists have commented on the giraffe’s long neck. A prominent theory, from Darwin on, has been that, in times of drought, a longer neck enabled the giraffe to browse nearer the tops of trees, beyond the reach of other animals. So any heritable changes leading to a longer neck were favored by natural selection, rendering the animal more fit and better able to survive during drought.
It sounds eminently reasonable, as such stories usually do. Problems arise only when we try to find evidence favoring this hypothesis over others. My colleague, whole-organism biologist Craig Holdrege, has summarized what he and others have found, including this: First, taller, longer-necked giraffes, being also heavier than their shorter ancestors, require more food, which counters the advantage of height. Second, the many browsing and grazing antelope species did not go extinct during droughts, “so even without growing taller the giraffe ancestor could have competed on even terms for those lower leaves”. Third, male giraffes are up to a meter taller than females. If the males would be disadvantaged by an inability to reach higher branches of the trees, why are not the females and young disadvantaged? Fourth, it turns out that females often feed “at belly height or below”. And in well-studied populations of east Africa, giraffes often feed at or below shoulder level during the dry season, while the rainy season sees them feeding from the higher branches — a seasonal pattern the exact opposite of the one suggested by the above hypothesis (Holdrege 2005).
Another problem with the usual sort of fitness theorizing becomes evident when you consider the unity of the organism and the multifunctionality of its parts. Holdrege remarks of the elephant that it “stands sometimes on its back legs and extends its trunk to reach high limbs — but no one thinks that the elephant developed its trunk as a result of selection pressures to reach higher food”. The trunk develops within a complex, multifaceted, interwoven unity. It “belongs” to that unity, not to a single, isolated function. The effort to analyze out of this unity a particular trait and assign it a separate causal fitness is always artificial. This is certainly true of the giraffe, whose long neck not only allows feeding from high branches, but also raises the head to where the animal has the protection of a large field of view (the giraffe’s vision is much more developed than its sense of smell); serves as an “arm” for the use of the head as a “club” in battles between males; and plays a vital role as a kind of pendulum enabling the animal’s graceful galloping movement across the African plain.
The unworkability of the fitness concept has been widely acknowledged. Here is a summary statement of some of the problems:
In Lewontin’s summary: “What is required is an experimental program of unpacking ‘fitness’. This involves determining experimentally how different genotypes juxtapose different aspects of the external world, how they alter that world and how those different environments that they construct affect their own biological processes and the biological processes of others” (Lewontin 2001). I doubt whether anyone has even pretended to do this unpacking in a way adequate to demonstrate the randomness of mutations relative to fitness.
If reduced fitness can be on the path toward higher fitness, and if the environment for which the organism is supposed to be fit is itself a modifier of the organism’s fitness, then to what solid and stable ground do we anchor our idea of fitness? If asked for a definition of “fitness”, most biologists, especially those who are not philosophically inclined, would probably answer with Carmen Sapienza, a professor at Temple University’s Fels Institute for Cancer Research and Molecular Biology: “At bottom line, fitness is simply the number of offspring provided to the next generation” (Sapienza 2010). And on that conviction there hangs a tale.
Along with his anecdote about the wolf, Bethell argued that evolutionary theory based on natural selection (survival of the fittest) is vacuous: it states that, first, evolution can be explained by the fact that, on the whole, only the fitter organisms survive and achieve reproductive success; and second, what makes an organism fit is the fact that it survives and successfully reproduces. This is the long-running and much-debated claim that natural selection, as an explanation of the evolutionary origin of species, is tautological — it cannot be falsified because it attempts no real explanation. It tells us: the kinds of organisms that survive and reproduce are the kinds of organisms that survive and reproduce.
It happens that Bethell was savaged by Stephen Jay Gould for making this claim. Gould pointed out that Darwin and his successors hypothesized independent conditions — “engineering criteria”, as biologists like to say — for the assessment of fitness. These conditions may facilitate and explain reproductive success, but do not merely equate to it. In other words, the concept of fitness need not rely only on the concept of survival (or reproductive success).
However, the appeal to engineering criteria in the abstract does not by itself get us very far. As philosopher Ronald Brady reminded us when discussing this dispute in an essay entitled “Dogma and Doubt” (1982; see also Brady 1979), what matters for judging a proposed scientific explanation is not only the specification of non-tautological criteria for testing it, but also our ability to apply the test meaningfully. If we have no practical way to sum up and assess the fitness or adaptive value of the traits of an organism apart from measurements of survival rates (evolutionary success), then on what basis can we use the idea of survival of the fittest (natural selection) to explain evolutionary success — as opposed to using it merely as a blank check for freely inventing explanations of the sort commonly derided as “just-so stories”.
Some philosophers and evolutionary biologists have long referred with a note of patronizing scorn to anyone who brings up the “tautology problem”, as if the reference betrays hopeless ignorance of a problem long ago solved. For example, Michael Ruse, reviewing a book by Philip Kitcher, could already refer in 1984 to the “hoary old chestnut” about tautology, and then (in sympathy with Kitcher) dismiss the claim as “ridiculous” (Ruse 1984). After all, he writes, “Could generations of evolutionists really have been deceived into thinking they were doing empirical studies, when they spent hours crouched over fruit-flies in the lab, or weeks tramping through the woods looking at butterflies, snails, and finches? A tautology requires no such study”.
But what is really ridiculous is to suggest that empirical work, simply by virtue of being empirical work, offers a proper test of any particular theory. Certainly the work of evolutionary biologists has brought us many wonderful insights into the lives of organisms — insights of the sort that were being gained long before Darwin. But such insights provide a test of the theory that the origin of species can be adequately explained by natural selection of the fittest organisms, only if they do in fact provide a test. Simply refusing to address the question does no one any good. (The dismissive attitude exemplified by Ruse continues into our own day. As a response to it, Brady’s essays remain relevant and illuminating.)
But for our purposes, the argument about tautology is of interest not so much as an issue in itself (I build no case on it), but because all the sound and fury that have been vented over the topic point us toward the obscurity dogging all discussions of fitness. It is no minor problem. You have to have some reasonable notion of “fitness” if you’re trying to explain all the amazingly complex, well-adapted, and diverse life forms on earth by the fact that nature preferentially selects the fitter organisms to survive. The question, “What, exactly, is being selected, and how does it explain the observed course of evolution?” needs to be answered if the theory of evolution by natural selection is to be much of a theory at all.
To make the problem worse, evolutionary biologists are driven to arrive at scalar values for fitness — values enabling reasonable comparison of traits and organisms, so that one can determine which is the fittest. But how do you take all the infinitely wide-ranging and interwoven considerations that might bear on fitness and reduce them to a scalar value? It is a practical impossibility. As a pair of philosophers put it in a 2002 article, “Suppose a certain species undertakes parental care, is resistant to malaria, and is somewhat weak but very quick. How do these fitness factors add up? We have no idea at all” (Matthen and Ariew 2005).
Susan Mills and John Beatty, major contributors to the most popular theory of fitness (a now rather shopworn and probabilistic theory known as the propensity theory), acknowledged that “since an organism’s traits are obviously important in determining its fitness, it is tempting to suggest that fitness be defined independently of survival and reproduction, as some function of traits” — that is, presumably, in terms of engineering criteria. Noting that such a definition would have the advantage of being noncircular, they went on:
However, no one has seriously proposed such a definition, and it is easy to see why. The features of organisms which contribute to their survival and reproductive success are endlessly varied and context dependent. What do the fittest germ, the fittest geranium, and the fittest chimpanzee have in common? It cannot be any concretely characterized physical property, given that one and the same physical trait can be helpful in one environment and harmful in another. (Mills and Beatty 1979)
More than a decade later Beatty remarked that “The precise meaning of ‘fitness’ has yet to be settled, in spite of the fact — or perhaps because of the fact — that the term is so central to evolutionary thought” (Beatty 1992). This is, if anything, even more emphatically true today. The concept remains troubled, as it has been from the very beginning, with little agreement on how to make it a workable part of evolutionary theory. Indeed, the “consensus view”, as Roberta Millstein and Robert Skipper, Jr., write in The Cambridge Companion to the Philosophy of Biology (2007), is that “biologists and philosophers have yet to provide an adequate interpretation of fitness”. And Lewontin, together with University of Missouri philosopher André Ariew, expressed the conviction that “no concept in evolutionary biology has been more confusing” than that of fitness (Ariew and Lewontin 2004). Yet the neo-Darwinian theory of natural selection hinges, “as empirical science”, upon a reasonable understanding of what fitness means (Bouchard and Rosenberg 2004).
This is a stunning place to find ourselves, given the confident pronouncements we heard issuing from Dennett and Dawkins at the outset of our investigation. Not only do we have great difficulty locating meaningless chance in the context of the actual life of organisms; it now turns out that the one outcome with respect to which randomness of mutation is supposed to obtain — namely, the organism’s fitness — cannot be given any definite or agreed-upon meaning, let alone one that is testable. How then did anyone ever arrive at the conclusion that mutations are random in relation to fitness? There certainly has never been any empirical demonstration of the conclusion, and it is difficult even to conceive the possibility of such a demonstration.
What we are left to surmise, then, is that the doctrine of randomness has simply been projected onto the phenomena of organic life as a matter of pre-existing philosophical commitment.
In any case, it is startling to realize that the entire brief for demoting human beings, and organisms in general, to meaningless scraps of molecular machinery — a demotion that fuels the long-running science-religion wars and that, as “shocking” revelation, supposedly stands on a par with Copernicus’ heliocentric proposal — rests on the vague conjunction of two scarcely creditable concepts: the randomness of mutations and the fitness of organisms. And, strangely, this shocking revelation has been sold to us in the context of a descriptive biological literature that, from the molecular level on up, remains almost nothing but a documentation of the meaningfully organized, goal-directed stories of living creatures. Somehow, somewhere, we are still supposed to see blind, mindless, random, purposeless automatisms as the ultimate explanatory root of all evolutionary change.
The situation calls to mind a widely circulated cartoon by Sidney Harris, which shows two scientists in front of a blackboard on which a body of theory has been traced out with the usual tangle of symbols, arrows, equations, and so on. But there’s a gap in the reasoning at one point, filled by the words, “Then a miracle occurs”. And the one scientist is saying to the other, “I think you should be more explicit here in step two”.
In the case of evolution, I picture Dennett and Dawkins filling the blackboard with their vivid descriptions of living, highly regulated, coordinated, integrated, and intensely meaningful biological processes, and then inserting a small, mysterious gap in the middle, along with the words, “Here something random occurs”.
This “something random” looks every bit as wishful as the appeal to a miracle. It is the central miracle in a gospel of meaninglessness, a “Randomness of the gaps”, demanding an extraordinarily blind faith. At the very least, we have a right to ask, “Can you be a little more explicit here?” A faith that fills the ever-shrinking gaps in our knowledge of the organism with a potent meaninglessness capable of transforming everything else into an illusion is a faith that could benefit from some minimal grounding. Otherwise, we can hardly avoid suspecting that the importance of randomness in the minds of the faithful is due to its being the only presumed scrap of a weapon in a compulsive struggle to deny all the obvious meaning of our lives.
Read the supplementary text, “Natural Genome Remodeling”.
1. Dawkins and Dennett sometimes seem fixated upon design, presumably as a result of their severely constraining preoccupation with religion and with the “creationism” or “intelligent design” promulgated by some religious folks. You will not find me speaking of design (although the word has its legitimate uses), simply because — as I’ve made abundantly clear in previous articles — organisms cannot be understood as having been designed, machine-like, whether by an engineer-God or a Blind Watchmaker elevated to god-like status. If organisms participate in a higher life, it is a participation that works from within — at a deep level the ancients recognized as that of the logos informing all things. It is a sharing of the springs of life and being, not a mere receptivity to some sort of external mechanical tinkering modeled anthropocentrically on human engineering.
2. In addition to natural selection, I could speak of other processes often considered to be “forces” of evolution — migration, physical constraints upon development, genetic drift, assortative mating, and so on — but none of this would alter the course of my argument. As for “mutation”, it will become evident (particularly in the supplementary text referred to a little later) that I use the term broadly to include recombination and other sorts of genetic change. I should also mention that this paper will focus upon more complex organisms, often citing work on mammals and humans. There are other stories, equally dramatic, to be told at the lower end of the scale of complexity.
Allen, J. A. (1988). “Frequency-Dependent Selection by Predators”, Philosophical Transactions of the Royal Society, Part B, Biology vol. 319, pp. 485-503.
Ariew, André and R. C. Lewontin (2004). “The Confusions of Fitness”, British Journal for the Philosophy of Science vol. 55, pp. 347-363.
Barbaric, Ivana, Gaynor Miller and T. Neil Dear (2007a). “Appearances Can Be Deceiving: Phenotypes of Knockout Mice”, Briefings in Functional Genomics and Proteomics vol. 6, no. 2, pp. 91-103. doi:10.1093/bfgp/elm008
Beatty, John (1984). “Chance and Natural Selection”, Philosophy of Science vol. 51, no. 2 (June), pp. 183-211.
Beatty, John (1992). “Fitness: Theoretical Contexts”, in Keywords in Evolutionary Biology, edited by Evelyn Fox Keller and Elisabeth A. Lloyd. Cambridge MA: Harvard University Press.
Bethell, Tom (1976). “Darwin’s Mistake”. Harpers Magazine vol. 252 (Feb.), pp. 70-75.
Bouchard, Frédéric and Alex Rosenberg (2004). “Fitness, Probability and the Principles of Natural Selection”, British Society for the Philosophy of Science vol. 55, pp. 693-712.
Brady, Ronald H. (1979). “Natural Selection and the Criteria by Which a Theory Is Judged”, Systematic Biology vol. 28, pp. 600-21.
Brady, R. H. (1982). “Dogma and Doubt”, Biological Journal of the Linnean Society vol. 17, pp. 79-96. Available at https://natureinstitute.org/txt/rb/dogma/dogmadoubt.htm.
Bridges, B. A. (1969). “Mechanisms of Radiation Mutagenesis in Cellular and Subcellular Systems”, Annual Review of Nuclear Science vol. 19, pp. 139-78.
Cook, Norman D. (1977). “The Case for Reverse Translation”, Journal of Theoretical Biology vol. 64, pp. 113-35.
Dawkins, Richard (1996). Climbing Mount Improbable. New York. W. W. Norton.
Dawkins, Richard (2006a). The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe Without Design. New York: W. W. Norton. First edition published in 1996.
Dawkins, Richard (2006b). The Selfish Gene. Oxford: Oxford University Press. Originally published in 1976.
Dennett, Daniel (1995a). Darwin’s Dangerous Idea: Evolution and the Meanings of Life. New York: Simon and Schuster.
Dennett, Daniel (1995b). Abstract of “Evolution as Algorithm”, in The Mind, the Brain and Complex Adaptive Systems, edited by Harold Morowitz and Jerome Singer, Santa Fe Institute Studies in the Sciences of Complexity, Proceedings, vol. 22, pp. 221-3. Boston: Addison-Wesley. Abstract available at https://ase.tufts.edu/cogstud/papers/evolinsu.htm.
Elespuru, R. K. and K. Sankaranarayanan (2006). “New Approaches to Assessing the Effects of Mutagenic Agents on the Integrity of the Human Genome”, Mutation Research vol. 616, pp. 83-9. doi:10.1016/j.mrfmmm.2006.11.015
Gould, Stephen Jay (1976). “This View of Life: Darwin’s Untimely Burial”, Natural History vol. 85, pp. 24-30.
Graur, Dan (2008). “Single-Base Mutation”, Wiley Online Library, eLS. doi:10.1002/9780470015902.a0005093.pub2
Henry, Richard Conn (2005). “The Mental Universe”, Nature vol. 436, p. 29 (July 7). doi:10.1038/436029a
Holdrege, Craig (2005). “The Giraffe’s Long Neck: From Evolutionary Fable to Whole Organism”, Nature Institute Perspectives no. 4. Available at https://natureinstitute.org/pub/persp.
Lewontin, Richard C. (1978). "Adaptation", Scientific American vol. 239, no. 3 (Sep.), pp. 212-30.
Lewontin, R. C. (1983). “Gene, Organism, and Environment”, in Evolution: From Molecules to Men, edited by D. S. Bendall. Cambridge UK: Cambridge University Press. Reprinted in Oyama, Griffiths and Gray 2001, pp. 59-66.
Lewontin, Richard C. (2001). “Gene, Organism and Environment: A New Introduction”, in Oyama, Griffiths and Gray (2001), pp. 55-7.
Matthen, Mohan and André Ariew (2005). “How to Understand Causal Relations in Natural Selection: Reply to Rosenberg and Bouchard”, Biology and Philosophy vol. 20, pp. 355-64. doi:10.1007/s10539-005-5589-1
Mills, Susan K. and John H. Beatty (1979). “The Propensity Interpretation of Fitness”, Philosophy of Science vol. 46, no. 2 (June), pp. 263-86.
Millstein, Roberta L. and Robert A. Skipper Jr. (2007). “Population Genetics”, in The Cambridge Companion to the Philosophy of Biology, edited by David L. Hull and Michael Ruse. Cambridge UK: Cambridge University Press.
Oyama, Susan, Paul E. Griffiths and Russell D. Gray, editors (2001). Cycles of Contingency: Developmental Systems and Evolution. Cambridge MA: MIT Press.
Page, Scott L. and R. Scott Hawley (2003). “Chromosome Choreography: The Meiotic Ballet”, Science vol. 301 (Aug. 8) pp. 785-9. doi:10.1126/science.1086605
Ruse, Michael (1984). Untitled (review of Philip Kitcher’s Abusing Science: The Case Against Creationism), Philosophy of Science vol. 51, no. 2 (June), pp. 348-54.
Sapienza, Carmen (2010). “Selection Does Operate Primarily on Genes”, in Contemporary Debates in Philosophy of Biology, edited by Francisco J. Ayala and Robert Arp. Malden MA: Wiley-Blackwell.
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